Instrument Fundamentals
http://justindickson.com/band/fundamentals.htmhttp://www.beginningbandbootcamp.com

Practicing Tutorial
Click here for a presentation on how and what to practice.

Fingerings
http://flutetrainer.com 
http://www.clarinettrainer.com
http://www.bassoontrainer.com
http://www.saxtrainer.musickramer.com
http://classic.musictheory.net/82 (for brass)
http://www.norlanbewley.com/trombone/slide-positions.htm

Note Reading
http://musictheory.net
www.classic.musictheory.net

Composition
www.noteflight.com

Embouchure 
http://www.tcnj.edu/~mckinney/clarinet_embouchure.htm

Percussion
www.vicfirth.com/education

Snare Science: http://www.snarescience.com/index.php (While geared more toward marching/WGI/DCI this is a GREAT site for drumming...started by marchers, this has TONS of sheet music and exercises...look on the left hand side "navigate" and it there are exercises, sheet music, a Grid Generator and tenor music as well!)

Ninja Drummist: http://www.ninjadrummist.com/ (An education drum site from Lewis Patridge...there are over 507 hybrid rudiments on this site...learn your standard ones first)

Drummers world: http://www.drummerworld.com/ (geared more toward drumset players)

Jazz
http://academy.jalc.org/collection/learn-from-the-jlco/ 
www.smithsonianjazz.com